PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G143800.1
Common NameB456_007G143800, LOC105803176
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 505aa    MW: 55612.9 Da    PI: 5.5731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G143800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.8e-13358404455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Gorai.007G143800.1 358 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 404
                         799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-4549234IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-19357426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-14357408No hitNo description
PfamPF000102.9E-10358404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-18358424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MGEMFWANEE DKAKVESVLG TEACDYLILL ASKNMLSDFI SPPPSYLGLQ QKLCEVVERS  60
NWNYAIYWQV SSLKSGGSIL IWGDGHCRDL KLGGVGDASC SADAKLEGVE KINEVRKQVL  120
QKLRACFGGS EEDNYPAKLD GVSDMEMFYL TSMFFKFHCD ASYGPAESYK SSKPIWSSDS  180
NCCSDHYQSR SFLARSAGLQ TVVFVPVKSG VVELGSINLI PEDQNAVEMV SAMFGGSSSV  240
QAKTVPKIFG RELSLGGSKS QSISINFSPK MEDESGFMLE SYDVQALGSN QVYGNSSNGC  300
QGDSEAKLFP QLLVGGLNTQ ARISGVEHPK DDSPSLPDER KPRKRGRKPA NGREEPLNHV  360
EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAITYI TDLQMKIRVL ETEKEMVNNG  420
QKQLSMPDID FQQRHEDVVV TMRYPLDAHP VSKVLKALKE NQIAARESDV STTDNDKIVH  480
TFTIGAPGGA AEQLKEKLLD ALSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A3e-15492349192Transcription factor MYC3
4rs9_A3e-15492349192Transcription factor MYC3
4rqw_B3e-15492349192Transcription factor MYC3
4rqw_A3e-15492349192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339347RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490666.10.0PREDICTED: transcription factor bHLH3
RefseqXP_012490667.10.0PREDICTED: transcription factor bHLH3
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A0D2SJU60.0A0A0D2SJU6_G
STRINGPOPTR_0002s04310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]